PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012815-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 323aa    MW: 35143.7 Da    PI: 10.1243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012815-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31250307359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeH+h+
  NNU_012815-RA 250 DEYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERAPDDPTMLIVTYEGEHRHS 307
                    9*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.4E-20199246IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-33236309IPR003657WRKY domain
PROSITE profilePS5081131.146243309IPR003657WRKY domain
SuperFamilySSF1182905.23E-27246309IPR003657WRKY domain
SMARTSM007741.5E-37248308IPR003657WRKY domain
PfamPF031061.0E-26250306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAVDLLSFSK MDEQIAIQEA ASAGLKSMEH LIRLMSHQSP QHQKLNQLDC REITDFTVAK  60
FKKVISLLNR TGHARFRRGP PSSASTSFSV PQPQTTLNLP PTSAPAPHVQ SQPQALTLDF  120
TKPNLLNHPS SNPTDASTCQ FSKESFSISP PMSSANSSFM SSITTGDGSV SNGKQGSSLF  180
ATPTPAVSAG KPPLSSSYRK KCHGHGHSDD ISGKYSESGR CHCSKRRKSR VKKTIRVPAI  240
SSKMADIPPD EYSWRKYGQK PIKGSPYPRG YYKCSSLRGC PARKHVERAP DDPTMLIVTY  300
EGEHRHSQPP PPDSVAGGLI ESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23236310275WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265415.10.0PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV151e-124WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLF6H9I71e-163F6H9I7_VITVI; Putative uncharacterized protein
TrEMBLB2G2831e-163B2G283_9R
STRINGVIT_04s0069g00920.t011e-162(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-115WRKY DNA-binding protein 11